SNP Report
Name | rs10520693   dbSNP |
---|---|
Location | chr:15,91152345 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10083547 | 1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes] |
rs11633340 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11638226 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12439713 | 1.00[CEU][hapmap] |
rs12595333 | 0.88[EUR][1000 genomes] |
rs16944690 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
rs16944705 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes] |
rs17180345 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs28444914 | 0.86[AFR][1000 genomes] |
rs3743402 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs3803565 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs4306478 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs4343256 | 1.00[TSI][hapmap] |
rs4534817 | 0.82[EUR][1000 genomes] |
rs6416555 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6416556 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6496693 | 0.86[JPT][hapmap] |
rs6496695 | 0.81[ASN][1000 genomes] |
rs6496699 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6496700 | 0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs6496709 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
rs6496710 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
rs6496716 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7164012 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs7170816 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
rs7175350 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs7175391 | 0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs7178587 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs7179955 | 0.89[AFR][1000 genomes] |
rs7180298 | 1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs7180658 | 0.89[AFR][1000 genomes] |
rs7180867 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs7182084 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs7183485 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7183489 | 0.93[AFR][1000 genomes] |
rs7495138 | 0.81[EUR][1000 genomes] |
rs8027641 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
rs8035823 | 0.86[AFR][1000 genomes] |
rs8036822 | 0.86[AFR][1000 genomes] |
rs8037259 | 0.86[AFR][1000 genomes] |
Symbol | Regulation type |
---|---|
CRTC3 | Proximal transcriptional regulation |
CRTC3 | Distal transcriptional regulation |
ENSG00000259314 | RNA binding protein mediated regulation |
CRTC3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014