SNP Report
Basic Infomation
| Name | rs6416555 dbSNP |
|---|---|
| Location | chr:15,91146911 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083547 | 0.91[EUR][1000 genomes] |
| rs10520693 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11633340 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11638226 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12439713 | 0.81[EUR][1000 genomes] |
| rs12442167 | 0.81[EUR][1000 genomes] |
| rs12443446 | 0.81[EUR][1000 genomes] |
| rs12593637 | 0.81[EUR][1000 genomes] |
| rs12595333 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs16944705 | 0.95[EUR][1000 genomes] |
| rs17180345 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3743402 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3803565 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4306478 | 0.84[EUR][1000 genomes] |
| rs4343256 | 0.81[EUR][1000 genomes] |
| rs4506872 | 0.81[EUR][1000 genomes] |
| rs4534817 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6416556 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6496695 | 0.84[ASN][1000 genomes] |
| rs6496699 | 0.85[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6496700 | 0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6496716 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7175350 | 0.91[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7175391 | 0.89[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7178220 | 0.81[ASN][1000 genomes] |
| rs7178587 | 0.96[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7180867 | 0.87[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7183485 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7495138 | 0.84[EUR][1000 genomes] |
| rs7495772 | 0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014