SNP Report
Name | rs10083547   dbSNP |
---|---|
Location | chr:15,91202665 |
Allele | G/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10520693 | 1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes] |
rs11633340 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes] |
rs11638226 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[EUR][1000 genomes] |
rs12439713 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12442167 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12443446 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12593600 | 0.87[EUR][1000 genomes] |
rs12593637 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12595333 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs16944705 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs16944717 | 0.81[ASW][hapmap];0.83[LWK][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes] |
rs17180345 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs3743402 | 0.93[EUR][1000 genomes] |
rs3803565 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4267284 | 0.87[AFR][1000 genomes] |
rs4306478 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4343256 | 1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4506872 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4534817 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6416555 | 0.91[EUR][1000 genomes] |
rs6416556 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs6496716 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes] |
rs7175350 | 1.00[CEU][hapmap] |
rs7175391 | 0.88[CHB][hapmap] |
rs7178587 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap] |
rs7180867 | 1.00[CEU][hapmap];0.89[CHD][hapmap];0.90[TSI][hapmap] |
rs7183485 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes] |
rs7495138 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7495772 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000245479 | Proximal transcriptional regulation |
UNC45A | Distal transcriptional regulation |
HDDC3 | Distal transcriptional regulation |
BLM | Distal transcriptional regulation |
ENSG00000259736 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014