SNP Report
Basic Infomation
| Name | rs12593600 dbSNP |
|---|---|
| Location | chr:15,91201771 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083547 | 0.87[EUR][1000 genomes] |
| rs12439713 | 1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12442167 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12443446 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12593637 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12595333 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs16944705 | 0.83[EUR][1000 genomes] |
| rs17180345 | 0.81[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3743402 | 0.81[EUR][1000 genomes] |
| rs3803565 | 0.81[EUR][1000 genomes] |
| rs4306478 | 0.81[AMR][1000 genomes] |
| rs4343256 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4506872 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4534817 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7495772 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000245479 | Proximal transcriptional regulation |
| UNC45A | Distal transcriptional regulation |
| HDDC3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014