SNP Report
Basic Infomation
| Name | rs7178587 dbSNP |
|---|---|
| Location | chr:15,91176998 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083547 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap] |
| rs10520693 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11633340 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11638226 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12439713 | 1.00[CEU][hapmap] |
| rs12595333 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16944705 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17180345 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3743402 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3803565 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4306478 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes] |
| rs4343256 | 0.90[TSI][hapmap] |
| rs4534817 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6416555 | 0.96[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6416556 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6496695 | 0.88[CHB][hapmap] |
| rs6496699 | 0.82[AMR][1000 genomes] |
| rs6496700 | 0.87[AMR][1000 genomes] |
| rs6496716 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7175350 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[AMR][1000 genomes] |
| rs7175391 | 1.00[CHB][hapmap];0.85[AMR][1000 genomes] |
| rs7180867 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs7183485 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7495138 | 0.80[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Proximal transcriptional regulation |
| ENSG00000259746 | Proximal transcriptional regulation |
| CRTC3 | Distal transcriptional regulation |
| ENSG00000259736 | RNA binding protein mediated regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014