SNP Report
Basic Infomation
| Name | rs7178220 dbSNP |
|---|---|
| Location | chr:15,91128189 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs4932349 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6416554 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs6416555 | 0.81[ASN][1000 genomes] |
| rs6496693 | 0.90[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6496695 | 1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6496696 | 1.00[GIH][hapmap] |
| rs6496699 | 0.96[ASN][1000 genomes] |
| rs6496700 | 1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7175350 | 1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7175391 | 1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7180867 | 0.81[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7183485 | 0.81[CHD][hapmap] |
| rs8026634 | 0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259212 | Distal transcriptional regulation |
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014