SNP Report
Basic Infomation
| Name | rs8035823 dbSNP |
|---|---|
| Location | chr:15,91167701 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10520693 | 0.86[AFR][1000 genomes] |
| rs11853399 | 1.00[AMR][1000 genomes] |
| rs11857497 | 0.85[AFR][1000 genomes] |
| rs13380036 | 0.83[AFR][1000 genomes] |
| rs13380037 | 0.83[AFR][1000 genomes] |
| rs16944572 | 1.00[AMR][1000 genomes] |
| rs16944690 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28444914 | 0.85[AFR][1000 genomes] |
| rs6496709 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6496710 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7164012 | 0.96[AFR][1000 genomes] |
| rs7170816 | 0.92[AFR][1000 genomes] |
| rs7179955 | 0.96[AFR][1000 genomes] |
| rs7180298 | 0.96[AFR][1000 genomes] |
| rs7180658 | 0.96[AFR][1000 genomes] |
| rs7182084 | 0.96[AFR][1000 genomes] |
| rs7183489 | 0.92[AFR][1000 genomes] |
| rs8027641 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8036022 | 0.83[AFR][1000 genomes] |
| rs8036822 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8037259 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Proximal transcriptional regulation |
| ENSG00000259746 | Distal transcriptional regulation |
| MAN2A2 | Distal transcriptional regulation |
| ENSG00000259736 | RNA binding protein mediated regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014