SNP Report
Basic Infomation
| Name | rs7180298 dbSNP |
|---|---|
| Location | chr:15,91165418 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10520693 | 1.00[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs11638226 | 1.00[YRI][hapmap] |
| rs11857497 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13380036 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13380037 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16944690 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs28444914 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28481974 | 1.00[AMR][1000 genomes] |
| rs28670393 | 1.00[AMR][1000 genomes] |
| rs6496709 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs6496710 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs7164012 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7170816 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7179955 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7180658 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7180867 | 0.80[YRI][hapmap] |
| rs7182084 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7183489 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8027641 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs8035823 | 0.96[AFR][1000 genomes] |
| rs8036022 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8036822 | 0.96[AFR][1000 genomes] |
| rs8037259 | 0.96[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Proximal transcriptional regulation |
| IQGAP1 | Distal transcriptional regulation |
| ENSG00000259736 | Distal transcriptional regulation |
| BLM | Distal transcriptional regulation |
| ENSG00000259314 | Distal transcriptional regulation |
| ENSG00000259736 | RNA binding protein mediated regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014