SNP Report
Basic Infomation
| Name | rs973398 dbSNP |
|---|---|
| Location | chr:12,48491048 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10161358 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10875716 | 0.88[CEU][hapmap] |
| rs10875718 | 0.88[CEU][hapmap] |
| rs10875719 | 0.88[CEU][hapmap] |
| rs10875721 | 0.81[EUR][1000 genomes] |
| rs10875743 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10875749 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10875753 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes] |
| rs1107654 | 1.00[CHB][hapmap] |
| rs11168351 | 0.88[CEU][hapmap] |
| rs11168408 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11168428 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11168437 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes] |
| rs11168441 | 1.00[CHB][hapmap] |
| rs11168460 | 1.00[CHB][hapmap] |
| rs12099462 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12228750 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12368659 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes] |
| rs12816820 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs1476607 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17122498 | 1.00[CHB][hapmap] |
| rs2051851 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2054905 | 1.00[CHB][hapmap] |
| rs3997 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4760612 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs4760679 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6580650 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs6580652 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6580654 | 0.81[EUR][1000 genomes] |
| rs7139330 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7295580 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7297824 | 1.00[CHB][hapmap] |
| rs7301003 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7307566 | 1.00[CHB][hapmap] |
| rs7315820 | 1.00[CHB][hapmap] |
| rs7486941 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs7487682 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs7971880 | 0.88[CEU][hapmap] |
| rs7975632 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes] |
| rs8716 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9971924 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | Proximal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014