SNP Report
Basic Infomation
| Name | rs7971880 dbSNP |
|---|---|
| Location | chr:12,48391055 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875716 | 0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10875718 | 0.84[CEU][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs10875719 | 0.84[CEU][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs10875721 | 0.85[EUR][1000 genomes] |
| rs10875743 | 0.88[CEU][hapmap] |
| rs10875749 | 0.81[CEU][hapmap] |
| rs10875753 | 0.81[CEU][hapmap];0.84[MEX][hapmap] |
| rs11168338 | 0.91[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs11168343 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11168351 | 0.84[ASW][hapmap];0.92[CEU][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs11168408 | 0.88[CEU][hapmap] |
| rs11168411 | 0.81[MKK][hapmap] |
| rs11168428 | 0.81[CEU][hapmap];0.84[MEX][hapmap] |
| rs11168437 | 0.84[MEX][hapmap] |
| rs12228750 | 0.88[CEU][hapmap] |
| rs12368659 | 0.81[CEU][hapmap] |
| rs12811832 | 0.86[TSI][hapmap] |
| rs12816820 | 0.81[CEU][hapmap] |
| rs12817104 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1476607 | 0.81[CEU][hapmap];0.92[MEX][hapmap] |
| rs1793957 | 1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2051851 | 0.88[CEU][hapmap] |
| rs3997 | 0.88[CEU][hapmap] |
| rs4760612 | 0.87[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs4760679 | 0.88[CEU][hapmap] |
| rs6580650 | 0.88[CEU][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs7301003 | 0.81[CEU][hapmap];0.84[MEX][hapmap] |
| rs7975632 | 0.88[CEU][hapmap];0.92[MEX][hapmap];0.81[EUR][1000 genomes] |
| rs8716 | 0.81[CEU][hapmap];0.84[MEX][hapmap] |
| rs973398 | 0.88[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014