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rVarBase
SNP Report
Basic Infomation
Name
rs12817104  
dbSNP
Location
chr:12,48382573
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10875716
0.95[EUR][1000 genomes]
rs10875721
0.80[EUR][1000 genomes]
rs11168338
0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11168343
0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11168351
0.87[EUR][1000 genomes]
rs12811832
0.83[EUR][1000 genomes]
rs7971880
0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
COL2A1
Proximal transcriptional regulation
COL2A1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)