SNP Report
Basic Infomation
| Name | rs11168338 dbSNP |
|---|---|
| Location | chr:12,48376969 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875716 | 0.83[LWK][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs10875718 | 0.84[TSI][hapmap] |
| rs10875719 | 0.84[TSI][hapmap] |
| rs11168343 | 0.84[EUR][1000 genomes] |
| rs11168351 | 0.88[TSI][hapmap] |
| rs11168411 | 0.83[LWK][hapmap] |
| rs11168437 | 0.83[LWK][hapmap] |
| rs12811832 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12817104 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1476607 | 0.83[LWK][hapmap] |
| rs7971880 | 0.91[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs7975632 | 0.83[LWK][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014