SNP Report
Basic Infomation
| Name | rs11168351 dbSNP |
|---|---|
| Location | chr:12,48403765 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875716 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs10875718 | 0.84[CEU][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs10875719 | 0.84[CEU][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs10875721 | 0.93[EUR][1000 genomes] |
| rs10875743 | 0.88[CEU][hapmap] |
| rs10875749 | 0.81[CEU][hapmap] |
| rs10875753 | 0.81[CEU][hapmap] |
| rs11168338 | 0.88[TSI][hapmap] |
| rs11168343 | 0.86[EUR][1000 genomes] |
| rs11168408 | 0.88[CEU][hapmap] |
| rs11168428 | 0.81[CEU][hapmap] |
| rs11168437 | 0.82[ASW][hapmap] |
| rs12228750 | 0.88[CEU][hapmap] |
| rs12368659 | 0.81[CEU][hapmap] |
| rs12579815 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs12580309 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12581263 | 0.93[ASN][1000 genomes] |
| rs12811832 | 0.84[TSI][hapmap] |
| rs12816820 | 0.81[CEU][hapmap] |
| rs12817104 | 0.87[EUR][1000 genomes] |
| rs12819124 | 0.89[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1476607 | 0.82[ASW][hapmap];0.81[CEU][hapmap] |
| rs17122615 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs17122617 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs2051851 | 0.88[CEU][hapmap] |
| rs3997 | 0.88[CEU][hapmap] |
| rs41272785 | 0.84[ASN][1000 genomes] |
| rs41369448 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4760612 | 0.87[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs4760679 | 0.88[CEU][hapmap] |
| rs60275794 | 0.91[ASN][1000 genomes] |
| rs6580650 | 0.88[CEU][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs6580652 | 0.88[EUR][1000 genomes] |
| rs7301003 | 0.81[CEU][hapmap] |
| rs7971880 | 0.84[ASW][hapmap];0.92[CEU][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs7975632 | 0.82[ASW][hapmap];0.88[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs8716 | 0.81[CEU][hapmap] |
| rs915920 | 0.88[CHB][hapmap] |
| rs973398 | 0.88[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000257985 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014