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rVarBase
SNP Report
Basic Infomation
Name
rs12581263  
dbSNP
Location
chr:12,48412942
Allele
A/T
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11168351
0.93[ASN][1000 genomes]
rs12579815
1.00[EUR][1000 genomes]
rs12580309
1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12819124
0.91[ASN][1000 genomes]
rs17122615
1.00[EUR][1000 genomes]
rs17122617
1.00[EUR][1000 genomes]
rs1814231
1.00[EUR][1000 genomes]
rs41272785
1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41369448
1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60275794
0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs915920
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
COL2A1
Distal transcriptional regulation
ENSG00000257955
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)