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rVarBase
SNP Report
Basic Infomation
Name
rs41272785  
dbSNP
Location
chr:12,48396009
Allele
T/G
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11168351
0.84[ASN][1000 genomes]
rs12579815
1.00[EUR][1000 genomes]
rs12580309
0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12581263
1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12819124
0.83[ASN][1000 genomes]
rs17122615
1.00[EUR][1000 genomes]
rs17122617
1.00[EUR][1000 genomes]
rs1814231
0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41369448
0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60275794
1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs915920
1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
COL2A1
Proximal transcriptional regulation
ENSG00000258203
Distal transcriptional regulation
ENSG00000257985
Distal transcriptional regulation
VDR
Distal transcriptional regulation
TMEM106C
Distal transcriptional regulation
ENSG00000257955
Distal transcriptional regulation
COL2A1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)