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rVarBase
SNP Report
Basic Infomation
Name
rs915920  
dbSNP
Location
chr:12,48392478
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11168351
0.88[CHB][hapmap]
rs12579815
0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs12580309
1.00[EUR][1000 genomes]
rs12581263
1.00[EUR][1000 genomes]
rs17122615
1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17122617
1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[EUR][1000 genomes]
rs1814231
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272785
1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41369448
1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[EUR][1000 genomes]
rs60275794
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
COL2A1
Distal transcriptional regulation
COL2A1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)