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rVarBase
SNP Report
Basic Infomation
Name
rs11168411  
dbSNP
Location
chr:12,48505003
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10875716
1.00[LWK][hapmap];0.81[MKK][hapmap]
rs11168338
0.83[LWK][hapmap]
rs11168437
1.00[LWK][hapmap]
rs1476607
1.00[LWK][hapmap]
rs7971880
0.81[MKK][hapmap]
rs7975632
1.00[LWK][hapmap]
rSNP related genes
Symbol
Regulation type
SENP1
Proximal transcriptional regulation
PFKM
Distal transcriptional regulation
PFKM
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
DBX2
SCAN
RPAP3
SCAN
SNORA2A
SCAN
PFKM
SCAN
PRKAG1
SCAN