SNP Report
Basic Infomation
| Name | rs7487682 dbSNP |
|---|---|
| Location | chr:12,48579665 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875718 | 0.83[GIH][hapmap] |
| rs10875719 | 0.88[GIH][hapmap] |
| rs10875743 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs10875749 | 0.88[CEU][hapmap];1.00[CHB][hapmap] |
| rs10875753 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.82[TSI][hapmap] |
| rs1107654 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.83[TSI][hapmap] |
| rs11168408 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs11168428 | 0.88[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap] |
| rs11168437 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.82[TSI][hapmap] |
| rs11168441 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs11168460 | 1.00[CHB][hapmap];0.88[YRI][hapmap] |
| rs12228750 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs12368659 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs12816820 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap] |
| rs1476607 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap] |
| rs2051851 | 0.80[CEU][hapmap] |
| rs2054905 | 1.00[CHB][hapmap] |
| rs2408955 | 0.82[GIH][hapmap] |
| rs2450994 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap] |
| rs2468943 | 0.81[GIH][hapmap] |
| rs2634681 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap] |
| rs2634684 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap] |
| rs2732448 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap] |
| rs2732457 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap] |
| rs2732466 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap] |
| rs2732480 | 0.83[GIH][hapmap] |
| rs2732481 | 1.00[CHD][hapmap];0.88[GIH][hapmap] |
| rs2732484 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap] |
| rs3997 | 0.81[CEU][hapmap] |
| rs4760612 | 1.00[CHB][hapmap];0.88[YRI][hapmap] |
| rs4760679 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
| rs6580650 | 0.88[ASW][hapmap];0.81[CEU][hapmap];0.90[GIH][hapmap] |
| rs7139330 | 1.00[CHB][hapmap] |
| rs7297824 | 1.00[CHB][hapmap] |
| rs7301003 | 0.88[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap] |
| rs7307566 | 1.00[CHB][hapmap];0.88[YRI][hapmap] |
| rs7315820 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap] |
| rs7486941 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs7975632 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap] |
| rs8716 | 0.88[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap] |
| rs923397 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap] |
| rs973398 | 0.81[CEU][hapmap];1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf68 | Proximal transcriptional regulation |
| ASB8 | Proximal transcriptional regulation |
| ENSG00000269514 | Distal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| C12orf68 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014