SNP Report
Basic Infomation
| Name | rs2408955 dbSNP |
|---|---|
| Location | chr:12,48499131 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875718 | 0.80[GIH][hapmap] |
| rs10875719 | 0.84[GIH][hapmap] |
| rs10875753 | 0.86[GIH][hapmap] |
| rs11168428 | 0.89[GIH][hapmap] |
| rs11168437 | 0.86[GIH][hapmap] |
| rs11168441 | 1.00[CHB][hapmap] |
| rs12819124 | 0.85[CEU][hapmap];0.81[TSI][hapmap] |
| rs1476607 | 0.89[GIH][hapmap] |
| rs6580650 | 0.86[GIH][hapmap] |
| rs7297824 | 1.00[CHB][hapmap] |
| rs7301003 | 0.89[GIH][hapmap] |
| rs7486941 | 0.82[GIH][hapmap] |
| rs7487682 | 0.82[GIH][hapmap] |
| rs7975632 | 0.86[GIH][hapmap] |
| rs8716 | 0.89[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | Proximal transcriptional regulation |
| PFKM | Proximal transcriptional regulation |
| RNF19B | Distal transcriptional regulation |
| NPL | Distal transcriptional regulation |
| SEC14L1 | Distal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| ENSG00000258051 | Distal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
| PFKM | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014