SNP Report
Basic Infomation
| Name | rs923397 dbSNP |
|---|---|
| Location | chr:12,48720392 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1061986 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10875753 | 1.00[CHD][hapmap];0.83[GIH][hapmap] |
| rs1107654 | 0.92[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11168428 | 1.00[CHD][hapmap];0.81[GIH][hapmap] |
| rs11168437 | 1.00[CHD][hapmap];0.83[GIH][hapmap] |
| rs11168464 | 0.80[EUR][1000 genomes] |
| rs12829841 | 0.87[EUR][1000 genomes] |
| rs1476607 | 1.00[CHD][hapmap];0.81[GIH][hapmap] |
| rs1489108 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2054905 | 0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2409003 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2409004 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2450994 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2450996 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2468943 | 0.96[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs2468946 | 0.81[AFR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2468949 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2634676 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2634678 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2634680 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2634681 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2634682 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2634684 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2634686 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2634688 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2634689 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2732441 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2732448 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2732453 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2732454 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2732457 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2732461 | 0.91[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2732462 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2732466 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2732479 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2732480 | 0.95[GIH][hapmap];0.85[MEX][hapmap];0.83[ASN][1000 genomes] |
| rs2732481 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2732484 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2732486 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7297824 | 0.92[CEU][hapmap] |
| rs7301003 | 1.00[CHD][hapmap];0.81[GIH][hapmap] |
| rs7307566 | 0.83[EUR][1000 genomes] |
| rs7315820 | 0.92[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap] |
| rs7486941 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap] |
| rs7487682 | 1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap] |
| rs7959684 | 1.00[CHD][hapmap] |
| rs8716 | 1.00[CHD][hapmap];0.81[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| H1FNT | Proximal transcriptional regulation |
| ZNF641 | Distal transcriptional regulation |
| ENSG00000257735 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014