SNP Report
Basic Infomation
| Name | rs11168464 dbSNP |
|---|---|
| Location | chr:12,48602115 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875763 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1107654 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11168460 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12829841 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2054905 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2409003 | 0.80[EUR][1000 genomes] |
| rs2409004 | 0.80[EUR][1000 genomes] |
| rs2450994 | 0.80[EUR][1000 genomes] |
| rs2634686 | 0.80[EUR][1000 genomes] |
| rs2732441 | 0.80[EUR][1000 genomes] |
| rs2732461 | 0.83[EUR][1000 genomes] |
| rs2732462 | 0.85[EUR][1000 genomes] |
| rs7297824 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7307566 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7315820 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7486941 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs923397 | 0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR10AD1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014