SNP Report
Basic Infomation
| Name | rs10875763 dbSNP |
|---|---|
| Location | chr:12,48580859 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875753 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1107654 | 0.83[ASN][1000 genomes] |
| rs11168437 | 0.83[ASN][1000 genomes] |
| rs11168441 | 0.83[ASN][1000 genomes] |
| rs11168460 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11168464 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12368659 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12816820 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12829841 | 0.83[ASN][1000 genomes] |
| rs2054905 | 0.83[ASN][1000 genomes] |
| rs6580654 | 0.81[AMR][1000 genomes] |
| rs7297824 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7307566 | 0.83[ASN][1000 genomes] |
| rs7315820 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7486941 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf68 | Distal transcriptional regulation |
| ENSG00000269514 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014