SNP Report
Basic Infomation
| Name | rs6580654 dbSNP |
|---|---|
| Location | chr:12,48556626 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875743 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10875749 | 0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10875753 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10875763 | 0.81[AMR][1000 genomes] |
| rs11168408 | 0.85[EUR][1000 genomes] |
| rs11168428 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11168437 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11168441 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs12228750 | 0.81[EUR][1000 genomes] |
| rs12368659 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12816820 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1476607 | 0.87[EUR][1000 genomes] |
| rs2051851 | 0.80[EUR][1000 genomes] |
| rs3997 | 0.81[EUR][1000 genomes] |
| rs7139330 | 0.80[EUR][1000 genomes] |
| rs7301003 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7486941 | 0.80[AMR][1000 genomes] |
| rs8716 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs973398 | 0.81[EUR][1000 genomes] |
| rs9971924 | 0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258051 | Proximal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| ENSG00000258051 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014