SNP Report

Basic Infomation

Name	rs2409004 dbSNP
Location	chr:12,48721451
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1061986	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1107654	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11168464	0.80[EUR][1000 genomes]
rs12829841	0.87[EUR][1000 genomes]
rs1489108	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2054905	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2409003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450996	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2468943	0.88[EUR][1000 genomes]
rs2468946	0.80[EUR][1000 genomes]
rs2468949	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634676	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2634678	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2634680	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2634681	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634682	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634684	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2634686	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634688	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634689	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732441	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732448	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732453	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732454	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732457	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2732461	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2732462	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2732466	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2732479	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2732480	0.83[ASN][1000 genomes]
rs2732481	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2732484	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2732486	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7307566	0.83[EUR][1000 genomes]
rs923397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
H1FNT	Proximal transcriptional regulation
ZNF641	Distal transcriptional regulation
ENSG00000257735	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)