SNP Report
Basic Infomation
| Name | rs12099462 dbSNP |
|---|---|
| Location | chr:12,48503104 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875743 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10875749 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11168408 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11168428 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12228750 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12368659 | 0.81[EUR][1000 genomes] |
| rs1476607 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2051851 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs3997 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4760679 | 0.82[EUR][1000 genomes] |
| rs7139330 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7301003 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8716 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs973398 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9971924 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | Proximal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| ENSG00000258051 | Distal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| PFKM | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014