SNP Report
Basic Infomation
| Name | rs17122498 dbSNP |
|---|---|
| Location | chr:12,48368464 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875743 | 1.00[CHB][hapmap] |
| rs10875749 | 1.00[CHB][hapmap] |
| rs10875753 | 1.00[CHB][hapmap] |
| rs11168408 | 1.00[CHB][hapmap] |
| rs11168428 | 1.00[CHB][hapmap] |
| rs11168437 | 1.00[CHB][hapmap] |
| rs12228750 | 1.00[CHB][hapmap] |
| rs12318019 | 1.00[JPT][hapmap] |
| rs12368659 | 1.00[CHB][hapmap] |
| rs12816820 | 1.00[CHB][hapmap] |
| rs1476607 | 1.00[CHB][hapmap] |
| rs34111422 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760612 | 1.00[CHB][hapmap] |
| rs4760679 | 1.00[CHB][hapmap] |
| rs4760686 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs57138989 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61134963 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7139330 | 1.00[CHB][hapmap] |
| rs7301003 | 1.00[CHB][hapmap] |
| rs73297117 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73297131 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7975632 | 1.00[CHB][hapmap] |
| rs8716 | 1.00[CHB][hapmap] |
| rs973398 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014