SNP Report
Basic Infomation
| Name | rs9631062 dbSNP |
|---|---|
| Location | chr:2,25110084 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 139)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10164466 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10164842 | 0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10165451 | 0.82[ASN][1000 genomes] |
| rs10171663 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10175064 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10179794 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10184813 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10187348 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10195271 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10196998 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10198275 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs10198356 | 0.82[ASN][1000 genomes] |
| rs10200566 | 0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs10203386 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
| rs10205326 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10207642 | 0.89[ASN][1000 genomes] |
| rs10207698 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1077641 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10865315 | 0.86[JPT][hapmap] |
| rs11675013 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11675198 | 0.84[ASN][1000 genomes] |
| rs11675457 | 0.86[JPT][hapmap] |
| rs11676272 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs11683212 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11683429 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11683748 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11684619 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11685125 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11686663 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs11687089 | 0.82[JPT][hapmap] |
| rs11688665 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11688754 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11689543 | 0.82[ASN][1000 genomes] |
| rs11689546 | 0.88[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11693654 | 0.83[ASN][1000 genomes] |
| rs11892869 | 0.82[JPT][hapmap] |
| rs11900505 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs12713419 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12986610 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13003430 | 0.82[ASN][1000 genomes] |
| rs13012304 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13030692 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13035239 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13035244 | 0.82[ASN][1000 genomes] |
| rs13382979 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs13387053 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13387729 | 0.82[JPT][hapmap] |
| rs13398155 | 0.90[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13404163 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13407913 | 0.86[JPT][hapmap] |
| rs13410999 | 0.82[JPT][hapmap] |
| rs13412941 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13428763 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13428789 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1529897 | 0.81[JPT][hapmap] |
| rs1541984 | 0.86[JPT][hapmap] |
| rs1550110 | 0.82[ASN][1000 genomes] |
| rs17046737 | 0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1865687 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1865688 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1865689 | 0.85[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs1968482 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2033653 | 0.90[JPT][hapmap] |
| rs2033654 | 0.90[JPT][hapmap] |
| rs2033655 | 0.90[JPT][hapmap] |
| rs2033656 | 0.86[JPT][hapmap] |
| rs2384056 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2384058 | 0.90[JPT][hapmap] |
| rs2384059 | 0.86[JPT][hapmap] |
| rs2384061 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs28836469 | 0.82[ASN][1000 genomes] |
| rs34697209 | 0.82[ASN][1000 genomes] |
| rs35033157 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35072958 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs36029941 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs36071142 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3903070 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs4077677 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4077678 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs4077679 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4077680 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs58648793 | 0.83[ASN][1000 genomes] |
| rs61117682 | 0.88[ASN][1000 genomes] |
| rs6545758 | 0.82[ASN][1000 genomes] |
| rs6545776 | 0.82[JPT][hapmap] |
| rs6545790 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs6545795 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6545800 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6545806 | 0.82[ASN][1000 genomes] |
| rs6545807 | 0.86[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6545808 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6545809 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6545813 | 0.82[ASN][1000 genomes] |
| rs6545814 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6705446 | 0.82[ASN][1000 genomes] |
| rs6706316 | 0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6712981 | 0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6713978 | 0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6719064 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6721750 | 0.85[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs67221599 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6722587 | 0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6723803 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6724772 | 0.85[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6725517 | 0.82[ASN][1000 genomes] |
| rs6726199 | 0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6730191 | 0.82[ASN][1000 genomes] |
| rs6733224 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6736711 | 0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6737082 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs6744205 | 0.82[ASN][1000 genomes] |
| rs6749170 | 0.86[JPT][hapmap] |
| rs6752483 | 0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6754997 | 0.82[ASN][1000 genomes] |
| rs6756609 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6760328 | 0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7560156 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7563204 | 0.82[ASN][1000 genomes] |
| rs7565460 | 0.82[ASN][1000 genomes] |
| rs7565468 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7567997 | 0.86[JPT][hapmap] |
| rs7576172 | 0.82[ASN][1000 genomes] |
| rs7576314 | 0.80[ASN][1000 genomes] |
| rs7576788 | 0.86[JPT][hapmap] |
| rs7580081 | 0.86[JPT][hapmap] |
| rs7586879 | 0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7591460 | 0.86[JPT][hapmap] |
| rs7593130 | 0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs7597157 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7597332 | 0.82[JPT][hapmap] |
| rs7603153 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7605335 | 0.85[ASN][1000 genomes] |
| rs7608185 | 0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7608976 | 0.82[JPT][hapmap] |
| rs876186 | 0.82[ASN][1000 genomes] |
| rs916484 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs916485 | 0.86[JPT][hapmap] |
| rs916486 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9631061 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ADCY3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014