SNP Report

Basic Infomation

Name	rs6545758 dbSNP
Location	chr:2,25074874
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 67)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10171663	0.80[CEU][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10184813	0.80[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10187348	0.81[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10195271	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10196998	0.87[ASN][1000 genomes]
rs10207698	0.82[CHB][hapmap]
rs10865315	0.86[JPT][hapmap]
rs11675013	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11675457	0.86[GIH][hapmap];0.90[JPT][hapmap]
rs11683212	0.81[CHB][hapmap]
rs11684619	0.81[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs11685125	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs11686663	0.86[JPT][hapmap]
rs11687089	0.90[JPT][hapmap]
rs11688665	0.82[CHB][hapmap]
rs11688754	0.81[CHB][hapmap]
rs11892869	0.90[JPT][hapmap]
rs12713419	0.82[CHB][hapmap];0.82[MEX][hapmap]
rs12986610	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.85[ASN][1000 genomes]
rs13012304	0.82[CHB][hapmap]
rs13030692	0.85[ASN][1000 genomes]
rs13387053	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs13387729	0.95[JPT][hapmap]
rs13398155	0.82[CHB][hapmap]
rs13404163	0.82[CHB][hapmap]
rs13407913	0.90[JPT][hapmap]
rs13410999	0.90[JPT][hapmap]
rs13412941	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs13428789	0.89[ASN][1000 genomes]
rs1529897	0.85[GIH][hapmap];0.85[JPT][hapmap]
rs1541984	0.86[GIH][hapmap];0.90[JPT][hapmap]
rs17046737	0.82[CHB][hapmap]
rs1865687	0.81[CHB][hapmap]
rs1865688	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1865689	0.83[GIH][hapmap];0.81[JPT][hapmap]
rs1968482	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2033653	0.86[JPT][hapmap]
rs2033654	0.86[JPT][hapmap]
rs2033655	0.86[GIH][hapmap];0.86[JPT][hapmap]
rs2033656	0.86[JPT][hapmap]
rs2384056	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2384058	0.86[JPT][hapmap]
rs2384059	0.86[JPT][hapmap]
rs36071142	0.89[ASN][1000 genomes]
rs4077677	0.81[CHB][hapmap]
rs4077679	0.82[CHB][hapmap]
rs4077680	0.80[CHB][hapmap]
rs58648793	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61117682	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6545776	0.90[JPT][hapmap]
rs6545808	0.82[CHB][hapmap]
rs6760328	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7565468	0.82[CHB][hapmap]
rs7567997	0.90[JPT][hapmap]
rs7576788	0.90[JPT][hapmap]
rs7580081	0.90[JPT][hapmap]
rs7586879	0.82[CHB][hapmap]
rs7591460	0.86[JPT][hapmap]
rs7597157	0.82[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.89[ASN][1000 genomes]
rs7597332	0.95[JPT][hapmap]
rs7608185	0.81[CHB][hapmap]
rs7608976	0.95[JPT][hapmap]
rs916484	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs916485	0.90[JPT][hapmap]
rs916486	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs9631061	0.83[ASN][1000 genomes]
rs9631062	0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ADCY3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 6)

eQTL related gene	Source
SAFB	SCAN
ADCY3	seeQTL
ADCY3	Pritchard
ADCY3	SCAN
ZNF512	SCAN
ADCY3	SCAN