SNP Report
Basic Infomation
| Name | rs2033655 dbSNP |
|---|---|
| Location | chr:2,25101092 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 121)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10165451 | 0.85[EUR][1000 genomes] |
| rs10171663 | 0.95[JPT][hapmap] |
| rs10184813 | 0.81[CHB][hapmap];0.95[JPT][hapmap] |
| rs10187348 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs10195271 | 0.82[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap] |
| rs10198275 | 0.82[CEU][hapmap];0.91[CHB][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10198356 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10200566 | 0.90[CHB][hapmap];0.84[EUR][1000 genomes] |
| rs10203386 | 0.85[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes] |
| rs10203482 | 0.83[EUR][1000 genomes] |
| rs10206196 | 0.83[EUR][1000 genomes] |
| rs10207698 | 0.82[CHB][hapmap] |
| rs10865315 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11675013 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs11675198 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11675457 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11676272 | 0.85[CHB][hapmap] |
| rs11683212 | 0.81[CHB][hapmap] |
| rs11683929 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11684619 | 0.81[CHB][hapmap];0.95[JPT][hapmap] |
| rs11685125 | 0.95[JPT][hapmap] |
| rs11686663 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11687089 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11688665 | 0.82[CHB][hapmap] |
| rs11688754 | 0.81[CHB][hapmap] |
| rs11689543 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11689546 | 0.82[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11693654 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11892869 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11900505 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12713419 | 0.82[CHB][hapmap] |
| rs12713422 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12986610 | 0.82[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap] |
| rs13003430 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13012304 | 0.82[CHB][hapmap] |
| rs13019149 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13035244 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs13387053 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs13387729 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.96[ASN][1000 genomes] |
| rs13398155 | 0.82[CHB][hapmap] |
| rs13404163 | 0.82[CHB][hapmap] |
| rs13407913 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13410999 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13412941 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs1529897 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1541984 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1550110 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17046737 | 0.82[CHB][hapmap] |
| rs1865687 | 0.81[CHB][hapmap] |
| rs1865688 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs1865689 | 0.88[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1968482 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs2033653 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2033654 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2033656 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2384055 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2384056 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs2384057 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2384058 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2384059 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2384061 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs28836469 | 0.85[EUR][1000 genomes] |
| rs34697209 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34889965 | 0.80[EUR][1000 genomes] |
| rs35177510 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs35803386 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3903070 | 0.89[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4077677 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs4077678 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes] |
| rs4077679 | 0.82[CHB][hapmap] |
| rs4077680 | 0.80[CHB][hapmap];0.81[JPT][hapmap] |
| rs6545758 | 0.86[GIH][hapmap];0.86[JPT][hapmap] |
| rs6545766 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6545776 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6545790 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6545800 | 0.89[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs6545806 | 0.86[EUR][1000 genomes] |
| rs6545808 | 0.82[CHB][hapmap] |
| rs6545809 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6545813 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6545814 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6705446 | 0.86[EUR][1000 genomes] |
| rs6706316 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6712981 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6713978 | 0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes] |
| rs6717671 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6718511 | 0.80[EUR][1000 genomes] |
| rs6721750 | 0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6722587 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6723803 | 0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes] |
| rs6724772 | 0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6725517 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6726199 | 0.85[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6730191 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6733224 | 0.91[CHB][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6737082 | 0.81[CHB][hapmap] |
| rs6744205 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6749170 | 0.92[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs6752483 | 0.88[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes] |
| rs6754997 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6756609 | 0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes] |
| rs6760328 | 0.82[CHB][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap] |
| rs7563204 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7565460 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7565468 | 0.82[CHB][hapmap] |
| rs7567997 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7576788 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7580081 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7586879 | 0.82[CHB][hapmap] |
| rs7591460 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7597157 | 0.82[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap] |
| rs7597332 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs7605335 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7608185 | 0.81[CHB][hapmap] |
| rs7608976 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs876186 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs916484 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs916485 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs916486 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs9631061 | 0.91[JPT][hapmap] |
| rs9631062 | 0.90[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ADCY3 | Proximal transcriptional regulation |
| ADCY3 | Distal transcriptional regulation |
| ADCY3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014