SNP Report
Name | rs6545800   dbSNP |
---|---|
Location | chr:2,25118885 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10164466 | 0.89[ASN][1000 genomes] |
rs10164842 | 0.89[ASN][1000 genomes] |
rs10165451 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10171663 | 0.89[CHB][hapmap] |
rs10172886 | 0.92[AFR][1000 genomes];0.87[ASN][1000 genomes] |
rs10175064 | 0.91[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs10179794 | 0.91[AFR][1000 genomes];0.86[ASN][1000 genomes] |
rs10184813 | 0.90[CHB][hapmap] |
rs10186242 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10187348 | 0.90[CHB][hapmap] |
rs10195271 | 0.90[CHB][hapmap];0.82[ASN][1000 genomes] |
rs10198275 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10198356 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10200566 | 0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10203386 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10203482 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10205326 | 0.81[ASN][1000 genomes] |
rs10206196 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10207642 | 0.87[ASN][1000 genomes] |
rs10207698 | 0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs1077641 | 0.89[ASN][1000 genomes] |
rs10865315 | 0.89[CEU][hapmap];0.91[CHB][hapmap];0.84[EUR][1000 genomes] |
rs11675013 | 0.90[CHB][hapmap];0.82[ASN][1000 genomes] |
rs11675198 | 0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11675457 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.83[EUR][1000 genomes] |
rs11676272 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[ASN][1000 genomes] |
rs11683212 | 0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs11683429 | 0.87[ASN][1000 genomes] |
rs11683748 | 0.88[ASN][1000 genomes] |
rs11683929 | 0.85[EUR][1000 genomes] |
rs11684619 | 0.90[CHB][hapmap] |
rs11685125 | 0.83[CHB][hapmap] |
rs11686663 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11687089 | 0.91[CHB][hapmap];0.84[EUR][1000 genomes] |
rs11688665 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs11688754 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs11689543 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11689546 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11693654 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11892869 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs11900505 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12713419 | 0.90[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs12713422 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12986610 | 0.90[CHB][hapmap];0.82[ASN][1000 genomes] |
rs13003430 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs13012304 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs13019149 | 0.85[EUR][1000 genomes] |
rs13030692 | 0.82[ASN][1000 genomes] |
rs13035239 | 0.88[ASN][1000 genomes] |
rs13035244 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs13382979 | 0.84[CHB][hapmap] |
rs13387053 | 0.90[CHB][hapmap];0.82[ASN][1000 genomes] |
rs13387729 | 0.81[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.91[MEX][hapmap];0.85[EUR][1000 genomes] |
rs13398155 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs13404163 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs13407913 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13410999 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs13412941 | 0.90[CHB][hapmap];0.82[ASN][1000 genomes] |
rs13428763 | 0.89[ASN][1000 genomes] |
rs1529897 | 0.89[CEU][hapmap];0.85[CHB][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes] |
rs1541984 | 0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[EUR][1000 genomes] |
rs1550110 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17046737 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs1865687 | 1.00[ASW][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs1865688 | 0.90[CHB][hapmap];0.82[ASN][1000 genomes] |
rs1865689 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1968482 | 0.90[CHB][hapmap] |
rs2033653 | 0.87[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2033654 | 0.87[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2033655 | 0.89[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes] |
rs2033656 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2384054 | 0.82[CHB][hapmap] |
rs2384056 | 0.90[CHB][hapmap] |
rs2384057 | 0.85[EUR][1000 genomes] |
rs2384058 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2384059 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2384061 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs28836469 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34697209 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34889965 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs35033157 | 0.91[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs35072958 | 0.89[ASN][1000 genomes] |
rs35177510 | 0.85[EUR][1000 genomes] |
rs35803386 | 0.85[EUR][1000 genomes] |
rs36029941 | 0.89[ASN][1000 genomes] |
rs3903070 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4077677 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs4077678 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4077679 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs4077680 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs6545776 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6545790 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6545795 | 0.88[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs6545806 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6545807 | 0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs6545808 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs6545809 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6545813 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6545814 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6705446 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6706316 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6712981 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6713978 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6717671 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6718511 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6719064 | 0.89[ASN][1000 genomes] |
rs6721750 | 0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs67221599 | 0.88[ASN][1000 genomes] |
rs6722587 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6723803 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6724772 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6725517 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6726199 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6730191 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6733224 | 1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6736210 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6736711 | 1.00[ASW][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs6737082 | 0.90[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6744205 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6746013 | 0.89[ASN][1000 genomes] |
rs6749170 | 0.96[CEU][hapmap];0.86[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6752483 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6754997 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6756609 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6760328 | 0.90[CHB][hapmap] |
rs713586 | 0.82[CHB][hapmap] |
rs713587 | 0.82[CHB][hapmap] |
rs7560156 | 0.89[ASN][1000 genomes] |
rs7563204 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7565460 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7565468 | 0.90[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs7567997 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7576172 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7576788 | 0.91[CHB][hapmap] |
rs7580081 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs7586879 | 1.00[ASW][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs7591460 | 0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes] |
rs7593130 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
rs7597157 | 0.90[CHB][hapmap] |
rs7597332 | 0.90[CHB][hapmap];0.84[EUR][1000 genomes] |
rs7603153 | 0.91[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs7605335 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7608185 | 0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs7608976 | 0.81[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes] |
rs876186 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs916484 | 0.90[CHB][hapmap] |
rs916485 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs916486 | 0.90[CHB][hapmap] |
rs9631061 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
rs9631062 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ADCY3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014