SNP Report

Basic Infomation

Name	rs10164466 dbSNP
Location	chr:2,25114069
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 117)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10164842	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10165451	0.89[ASN][1000 genomes]
rs10171663	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10175064	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179794	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10184813	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10186242	0.80[ASN][1000 genomes]
rs10187348	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10195271	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10196998	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10198275	0.89[ASN][1000 genomes]
rs10198356	0.89[ASN][1000 genomes]
rs10200566	0.88[ASN][1000 genomes]
rs10203386	0.83[ASN][1000 genomes]
rs10203482	0.85[ASN][1000 genomes]
rs10205326	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10206196	0.82[ASN][1000 genomes]
rs10207642	0.96[ASN][1000 genomes]
rs10207698	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11675013	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11675198	0.81[ASN][1000 genomes]
rs11683212	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11683429	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11683748	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11684619	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11685125	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11686663	0.82[ASN][1000 genomes]
rs11688665	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11688754	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11689543	0.88[ASN][1000 genomes]
rs11689546	0.88[ASN][1000 genomes]
rs11693654	0.81[ASN][1000 genomes]
rs11900505	0.89[ASN][1000 genomes]
rs12713419	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12713422	0.86[ASN][1000 genomes]
rs12986610	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13003430	0.88[ASN][1000 genomes]
rs13012304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13014100	0.82[ASN][1000 genomes]
rs13030692	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13035239	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13035244	0.88[ASN][1000 genomes]
rs13382979	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13387053	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13398155	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13404163	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412941	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13428763	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13428789	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1550110	0.89[ASN][1000 genomes]
rs17046737	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1865687	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865688	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1865689	0.82[ASN][1000 genomes]
rs1968482	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2384056	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2384061	0.87[ASN][1000 genomes]
rs28836469	0.89[ASN][1000 genomes]
rs34697209	0.89[ASN][1000 genomes]
rs35033157	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35072958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36029941	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36071142	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3903070	0.89[ASN][1000 genomes]
rs4077677	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4077678	0.89[ASN][1000 genomes]
rs4077679	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4077680	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61117682	0.85[ASN][1000 genomes]
rs6545790	0.84[ASN][1000 genomes]
rs6545795	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545800	0.89[ASN][1000 genomes]
rs6545806	0.89[ASN][1000 genomes]
rs6545807	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6545808	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6545809	0.89[ASN][1000 genomes]
rs6545813	0.89[ASN][1000 genomes]
rs6545814	0.89[ASN][1000 genomes]
rs6705446	0.89[ASN][1000 genomes]
rs6706316	0.89[ASN][1000 genomes]
rs6712981	0.89[ASN][1000 genomes]
rs6713978	0.89[ASN][1000 genomes]
rs6717671	0.81[ASN][1000 genomes]
rs6719064	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6721750	0.89[ASN][1000 genomes]
rs67221599	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6722587	0.89[ASN][1000 genomes]
rs6723803	0.89[ASN][1000 genomes]
rs6724772	0.89[ASN][1000 genomes]
rs6725517	0.89[ASN][1000 genomes]
rs6726199	0.89[ASN][1000 genomes]
rs6730191	0.89[ASN][1000 genomes]
rs6733224	0.89[ASN][1000 genomes]
rs6736711	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744205	0.89[ASN][1000 genomes]
rs6752483	0.89[ASN][1000 genomes]
rs6754997	0.88[ASN][1000 genomes]
rs6756609	0.89[ASN][1000 genomes]
rs6760328	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7560156	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7563204	0.89[ASN][1000 genomes]
rs7565460	0.89[ASN][1000 genomes]
rs7565468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7576172	0.89[ASN][1000 genomes]
rs7576314	0.87[ASN][1000 genomes]
rs7586879	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593130	0.87[ASN][1000 genomes]
rs7597157	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7603153	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605335	0.82[ASN][1000 genomes]
rs7608185	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs876186	0.89[ASN][1000 genomes]
rs916484	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs916486	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9631061	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9631062	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ADCY3	Distal transcriptional regulation
ADCY3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)