SNP Report

Basic Infomation

Name	rs10171663 dbSNP
Location	chr:2,25086431
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 118)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10164466	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10164842	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10175064	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10179794	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10184813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10196998	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10198275	0.89[CHB][hapmap]
rs10200566	0.89[CHB][hapmap]
rs10203386	0.85[CHB][hapmap]
rs10205326	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10207642	0.84[ASN][1000 genomes]
rs10207698	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1077641	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10865315	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs11675013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11675198	0.83[ASN][1000 genomes]
rs11675457	1.00[JPT][hapmap]
rs11676272	0.84[CHB][hapmap]
rs11683212	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11683429	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11683748	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11684619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11685125	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11686663	0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11687089	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs11688665	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11688754	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11689546	0.88[CHB][hapmap]
rs11693654	0.83[ASN][1000 genomes]
rs11892869	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs11900505	0.89[CHB][hapmap]
rs12713419	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12986610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13012304	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13030692	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13035239	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13382979	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes]
rs13387053	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13387729	1.00[JPT][hapmap]
rs13398155	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13404163	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13407913	1.00[JPT][hapmap]
rs13410999	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs13412941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13428763	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13428789	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529897	0.95[JPT][hapmap];0.82[AFR][1000 genomes]
rs1541984	1.00[JPT][hapmap]
rs17046737	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1865687	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1865688	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1865689	0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1968482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033653	0.95[JPT][hapmap]
rs2033654	0.95[JPT][hapmap]
rs2033655	0.95[JPT][hapmap]
rs2033656	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs2384056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2384058	0.95[JPT][hapmap]
rs2384059	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs2384061	0.89[CHB][hapmap]
rs35033157	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35072958	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36029941	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36071142	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3903070	0.89[CHB][hapmap]
rs4077677	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4077678	0.89[CHB][hapmap]
rs4077679	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4077680	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58648793	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61117682	0.95[ASN][1000 genomes]
rs6545758	0.80[CEU][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6545776	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs6545790	0.89[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs6545795	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6545800	0.89[CHB][hapmap]
rs6545807	0.87[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6545808	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6545809	0.89[CHB][hapmap]
rs6545814	0.89[CHB][hapmap]
rs6706316	0.89[CHB][hapmap]
rs6712981	0.89[CHB][hapmap]
rs6713978	0.89[CHB][hapmap]
rs6719064	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6721750	0.89[CHB][hapmap]
rs67221599	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6722587	0.89[CHB][hapmap]
rs6723803	0.89[CHB][hapmap]
rs6724772	0.89[CHB][hapmap]
rs6726199	0.89[CHB][hapmap]
rs6733224	0.89[CHB][hapmap]
rs6736711	0.86[CEU][hapmap];0.94[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6737082	0.84[CHB][hapmap]
rs6752483	0.89[CHB][hapmap]
rs6756609	0.89[CHB][hapmap]
rs6760328	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560156	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7565468	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7567997	1.00[JPT][hapmap]
rs7576788	1.00[JPT][hapmap]
rs7580081	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs7586879	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7591460	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs7593130	0.94[CHB][hapmap]
rs7597157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7597332	1.00[JPT][hapmap]
rs7603153	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7605335	0.84[ASN][1000 genomes]
rs7608185	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7608976	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs916484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916485	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs916486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9631061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9631062	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ADCY3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)