SNP Report

Basic Infomation

Name	rs10196998 dbSNP
Location	chr:2,25091786
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 70)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10164466	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10164842	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10171663	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10175064	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10179794	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10184813	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10187348	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10195271	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10205326	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10207642	0.83[ASN][1000 genomes]
rs10207698	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1077641	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11675013	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11675198	0.82[ASN][1000 genomes]
rs11683212	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11683429	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11683748	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11684619	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11685125	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11686663	0.83[ASN][1000 genomes]
rs11688665	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11688754	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11693654	0.81[ASN][1000 genomes]
rs12713419	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12986610	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13012304	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13030692	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13035239	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13382979	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13387053	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13398155	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13404163	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13412941	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13428763	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13428789	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17046737	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1865687	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1865688	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1865689	0.83[ASN][1000 genomes]
rs1968482	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2384056	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35033157	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35072958	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36029941	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36071142	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4077677	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4077679	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4077680	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58648793	0.89[ASN][1000 genomes]
rs61117682	0.93[ASN][1000 genomes]
rs6545758	0.87[ASN][1000 genomes]
rs6545790	0.81[ASN][1000 genomes]
rs6545795	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6545807	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6545808	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6719064	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67221599	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6736711	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6760328	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7560156	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7565468	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7586879	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7597157	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7603153	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7605335	0.83[ASN][1000 genomes]
rs7608185	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs916484	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs916486	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9631061	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9631062	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ADCY3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)