SNP Report

Basic Infomation

Name	rs9465850 dbSNP
Location	chr:6,20639409
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 73)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10440833	0.83[CHB][hapmap]
rs10946398	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11759505	0.85[ASN][1000 genomes]
rs13437429	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206734	0.88[CHB][hapmap]
rs2206738	0.85[ASN][1000 genomes]
rs2206739	0.85[ASN][1000 genomes]
rs2328528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2328529	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2328545	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs2328549	0.80[CEU][hapmap]
rs28665000	0.88[ASN][1000 genomes]
rs2876582	0.89[ASN][1000 genomes]
rs35456723	0.85[ASN][1000 genomes]
rs4515379	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4710940	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4712522	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4712523	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4712524	0.86[ASN][1000 genomes]
rs4712525	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4712526	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs56241903	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58048170	0.87[ASN][1000 genomes]
rs58723416	0.88[ASN][1000 genomes]
rs59800273	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61663643	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6456364	0.90[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs6456366	0.89[ASN][1000 genomes]
rs6456367	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6456368	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs6456369	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6456370	0.85[ASN][1000 genomes]
rs67077402	0.85[ASN][1000 genomes]
rs6906327	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6940200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72830669	0.89[ASN][1000 genomes]
rs742642	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7748382	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7751957	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7752780	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7752906	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7754840	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7758612	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs7766070	0.89[CHB][hapmap]
rs7766844	0.89[ASN][1000 genomes]
rs7768642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7772603	1.00[CHB][hapmap]
rs7774594	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9295472	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295474	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9295475	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs9348440	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs9350271	0.86[CHB][hapmap]
rs9356743	0.90[CEU][hapmap]
rs9356744	0.89[CHB][hapmap]
rs9356746	0.80[CEU][hapmap]
rs9358355	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9358356	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9368216	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9368218	0.85[ASN][1000 genomes]
rs9368219	0.89[CHB][hapmap]
rs9368222	0.88[CHB][hapmap]
rs9460537	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9460538	0.85[AFR][1000 genomes]
rs9460544	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9460545	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9460546	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9465837	0.90[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9465841	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9465846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9465847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9465851	0.80[AFR][1000 genomes]
rs9465860	0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
E2F3	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)