SNP Report

Basic Infomation

Name	rs9356743 dbSNP
Location	chr:6,20667688
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1040558	0.95[JPT][hapmap]
rs10946403	0.95[JPT][hapmap]
rs11753081	0.95[JPT][hapmap]
rs12111351	0.90[JPT][hapmap]
rs1569699	0.86[JPT][hapmap]
rs2328528	0.83[CEU][hapmap]
rs2328529	0.83[CEU][hapmap]
rs2328531	1.00[ASW][hapmap];0.85[MKK][hapmap]
rs2328545	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2328548	0.95[JPT][hapmap]
rs2328549	0.90[CEU][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap]
rs28665000	0.90[EUR][1000 genomes]
rs2876582	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4515379	0.83[CEU][hapmap]
rs58048170	0.90[EUR][1000 genomes]
rs58723416	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6456364	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6456366	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6931514	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6935599	0.95[JPT][hapmap]
rs6940200	0.83[CEU][hapmap]
rs72830669	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs742642	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7741604	0.88[MEX][hapmap]
rs7747752	0.90[JPT][hapmap]
rs7756992	0.86[JPT][hapmap]
rs7766844	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7767391	0.90[JPT][hapmap]
rs7768642	0.83[CEU][hapmap]
rs9295478	0.95[JPT][hapmap]
rs9348440	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.81[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9350270	0.95[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9356746	0.90[CEU][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap]
rs9356747	0.90[JPT][hapmap]
rs9356748	0.90[CEU][hapmap];0.90[JPT][hapmap]
rs9358357	0.95[JPT][hapmap]
rs9358358	0.90[CEU][hapmap];0.95[JPT][hapmap]
rs9368216	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9368224	0.95[JPT][hapmap]
rs9368226	0.90[JPT][hapmap]
rs9460550	0.95[JPT][hapmap]
rs9465841	0.83[CEU][hapmap]
rs9465846	0.83[CEU][hapmap]
rs9465847	0.83[CEU][hapmap]
rs9465850	0.90[CEU][hapmap]
rs9465852	1.00[ASW][hapmap];0.85[MKK][hapmap]
rs9465871	0.82[CHB][hapmap];0.95[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
HDAC4	SCAN
ETV4	SCAN
FCRLA	SCAN