SNP Report

Basic Infomation

Name	rs7767391 dbSNP
Location	chr:6,20725240
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1040558	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10946402	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10946403	0.93[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11753081	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12111351	0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs1569699	0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2206734	0.93[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs2328547	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2328548	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2328549	0.82[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs35612982	0.87[EUR][1000 genomes]
rs4710941	0.90[EUR][1000 genomes]
rs4712537	1.00[ASN][1000 genomes]
rs61128991	0.97[ASN][1000 genomes]
rs6456371	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67131976	0.88[EUR][1000 genomes]
rs6901559	0.86[ASN][1000 genomes]
rs6903175	1.00[ASN][1000 genomes]
rs6903744	0.99[ASN][1000 genomes]
rs6931514	0.95[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs6935599	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72830699	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7747752	1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[MKK][hapmap];0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs7756992	0.95[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.83[ASN][1000 genomes]
rs9295478	0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes]
rs9350270	0.90[JPT][hapmap]
rs9350272	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9356743	0.90[JPT][hapmap]
rs9356746	0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs9356747	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9356748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9358357	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9358358	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs9368219	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs9368224	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9368225	0.98[ASN][1000 genomes]
rs9368226	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9460550	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9465871	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000225832	Proximal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)