SNP Report
Basic Infomation
| Name | rs9350270 dbSNP |
|---|---|
| Location | chr:6,20667799 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1040558 | 0.82[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap] |
| rs10946403 | 0.82[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap] |
| rs11753081 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs12111351 | 0.90[JPT][hapmap] |
| rs1569699 | 0.82[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap] |
| rs2328545 | 0.96[EUR][1000 genomes] |
| rs2328548 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs2328549 | 0.85[GIH][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs28665000 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2876582 | 0.95[EUR][1000 genomes] |
| rs58048170 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs58723416 | 0.92[EUR][1000 genomes] |
| rs6456364 | 0.96[EUR][1000 genomes] |
| rs6456366 | 0.95[EUR][1000 genomes] |
| rs6931514 | 0.85[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap] |
| rs6935599 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs72830669 | 0.95[EUR][1000 genomes] |
| rs742642 | 0.96[EUR][1000 genomes] |
| rs7747752 | 0.90[JPT][hapmap] |
| rs7756992 | 0.82[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap] |
| rs7766844 | 0.96[EUR][1000 genomes] |
| rs7767391 | 0.90[JPT][hapmap] |
| rs9295478 | 0.82[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap] |
| rs9348440 | 0.96[GIH][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs9356743 | 0.95[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9356746 | 0.82[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs9356747 | 0.90[JPT][hapmap] |
| rs9356748 | 0.90[JPT][hapmap] |
| rs9358357 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs9358358 | 0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs9368216 | 0.95[EUR][1000 genomes] |
| rs9368224 | 0.82[CHB][hapmap];0.95[JPT][hapmap] |
| rs9368226 | 0.90[JPT][hapmap] |
| rs9460550 | 0.81[CHB][hapmap];0.95[JPT][hapmap] |
| rs9465871 | 0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014