SNP Report

Basic Infomation

Name	rs1040558 dbSNP
Location	chr:6,20713706
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10946402	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11753081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12111351	0.91[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12660618	0.91[ASN][1000 genomes]
rs1569699	1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2206734	1.00[CEU][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs2328547	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328549	0.87[CHB][hapmap];0.80[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs35612982	0.89[EUR][1000 genomes]
rs4710941	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4712537	0.88[ASN][1000 genomes]
rs61128991	0.91[ASN][1000 genomes]
rs6456371	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67131976	0.93[EUR][1000 genomes]
rs6901559	0.97[ASN][1000 genomes]
rs6903175	0.88[ASN][1000 genomes]
rs6903744	0.88[ASN][1000 genomes]
rs6931514	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.81[LWK][hapmap];0.92[ASN][1000 genomes]
rs6935599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72830699	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7451008	0.88[ASN][1000 genomes]
rs7747752	0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7756992	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7767391	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9295478	1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9350270	0.82[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs9350272	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9356743	0.95[JPT][hapmap]
rs9356746	1.00[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[ASN][1000 genomes]
rs9356747	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9356748	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9358357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9358358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9368219	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9368222	0.81[GIH][hapmap]
rs9368224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9368225	0.90[ASN][1000 genomes]
rs9368226	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9460550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9465871	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
OGDHL	SCAN
LZTFL1	SCAN