SNP Report
Basic Infomation
| Name | rs6901559 dbSNP |
|---|---|
| Location | chr:6,20706230 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1040558 | 0.97[ASN][1000 genomes] |
| rs10946402 | 0.97[ASN][1000 genomes] |
| rs10946403 | 0.94[ASN][1000 genomes] |
| rs11753081 | 0.99[ASN][1000 genomes] |
| rs12111351 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12660618 | 0.93[ASN][1000 genomes] |
| rs1569699 | 0.97[ASN][1000 genomes] |
| rs2328547 | 0.96[ASN][1000 genomes] |
| rs2328548 | 0.96[ASN][1000 genomes] |
| rs4712537 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs61128991 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6456371 | 0.96[ASN][1000 genomes] |
| rs6903175 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6903744 | 0.85[ASN][1000 genomes] |
| rs6931514 | 0.95[ASN][1000 genomes] |
| rs6935599 | 0.96[ASN][1000 genomes] |
| rs72830699 | 0.99[ASN][1000 genomes] |
| rs7451008 | 0.91[ASN][1000 genomes] |
| rs7747752 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7756992 | 0.97[ASN][1000 genomes] |
| rs7767391 | 0.86[ASN][1000 genomes] |
| rs9295478 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9350271 | 0.81[AFR][1000 genomes] |
| rs9350272 | 0.89[ASN][1000 genomes] |
| rs9356746 | 0.92[ASN][1000 genomes] |
| rs9356747 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9356748 | 0.85[ASN][1000 genomes] |
| rs9358357 | 0.93[ASN][1000 genomes] |
| rs9358358 | 0.92[ASN][1000 genomes] |
| rs9368224 | 0.93[ASN][1000 genomes] |
| rs9368225 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9368226 | 0.85[ASN][1000 genomes] |
| rs9460550 | 0.93[ASN][1000 genomes] |
| rs9465871 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014