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rVarBase
SNP Report
Basic Infomation
Name
rs7741604  
dbSNP
Location
chr:6,20731524
Allele
A/C
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs56017320
0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72832308
0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72832309
0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72832313
0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72832315
0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9356743
0.88[MEX][hapmap]
rs9688471
0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
HLA-DQA1
SCAN