SNP Report
Basic Infomation
| Name | rs59800273 dbSNP |
|---|---|
| Location | chr:6,20621137 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13437429 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2328528 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2328529 | 0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2328545 | 0.80[ASN][1000 genomes] |
| rs2876582 | 0.80[ASN][1000 genomes] |
| rs4515379 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56241903 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs61663643 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6456364 | 0.80[ASN][1000 genomes] |
| rs6456366 | 0.80[ASN][1000 genomes] |
| rs6940200 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72830669 | 0.80[ASN][1000 genomes] |
| rs7751957 | 0.89[ASN][1000 genomes] |
| rs7766844 | 0.80[ASN][1000 genomes] |
| rs7768642 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9295472 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9295475 | 0.80[ASN][1000 genomes] |
| rs9348440 | 0.81[ASN][1000 genomes] |
| rs9358355 | 0.80[ASN][1000 genomes] |
| rs9368216 | 0.80[ASN][1000 genomes] |
| rs9460537 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9465837 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9465841 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9465846 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9465847 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9465850 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014