SNP Report
Basic Infomation
| Name | rs4712525 dbSNP |
|---|---|
| Location | chr:6,20662966 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 66)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10440833 | 0.82[CHB][hapmap];0.86[JPT][hapmap] |
| rs10946397 | 0.83[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10946398 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11759505 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11965062 | 0.80[YRI][hapmap] |
| rs13437429 | 0.84[ASN][1000 genomes] |
| rs2206734 | 0.86[CHB][hapmap];0.85[JPT][hapmap] |
| rs2206738 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2206739 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2328528 | 0.95[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs2328545 | 0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs28665000 | 0.96[ASN][1000 genomes] |
| rs2876582 | 0.95[ASN][1000 genomes] |
| rs35456723 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4515379 | 0.91[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs4710940 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4712522 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4712523 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4712524 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4712526 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56241903 | 0.85[ASN][1000 genomes] |
| rs58048170 | 0.95[ASN][1000 genomes] |
| rs58723416 | 0.96[ASN][1000 genomes] |
| rs6456364 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs6456366 | 0.95[ASN][1000 genomes] |
| rs6456367 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6456368 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6456369 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6456370 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67077402 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6906327 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6940200 | 0.95[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs72830669 | 0.95[ASN][1000 genomes] |
| rs742642 | 0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7748382 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7751957 | 0.95[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs7752780 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7752906 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7754840 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7766070 | 0.86[CHB][hapmap];0.87[JPT][hapmap] |
| rs7766844 | 0.95[ASN][1000 genomes] |
| rs7768642 | 0.95[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs7772603 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7774594 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9295472 | 0.83[ASN][1000 genomes] |
| rs9295474 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9295475 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs9348440 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs9350271 | 0.82[CHB][hapmap];0.85[JPT][hapmap] |
| rs9356744 | 0.86[CHB][hapmap];0.87[JPT][hapmap] |
| rs9358355 | 0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs9358356 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9368216 | 0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs9368218 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9368219 | 0.86[CHB][hapmap] |
| rs9368222 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
| rs9460537 | 0.85[ASN][1000 genomes] |
| rs9460544 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9460545 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9460546 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9465837 | 0.91[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs9465841 | 0.91[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs9465846 | 0.95[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs9465847 | 0.95[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs9465850 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs9465860 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014