SNP Report

Basic Infomation

Name	rs10946397 dbSNP
Location	chr:6,20660693
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10946398	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11759505	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2206738	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2206739	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2328545	0.89[ASN][1000 genomes]
rs28665000	0.91[ASN][1000 genomes]
rs2876582	0.89[ASN][1000 genomes]
rs35456723	0.94[ASN][1000 genomes]
rs4710940	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4712522	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4712523	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4712524	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4712525	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4712526	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58048170	0.89[ASN][1000 genomes]
rs58723416	0.91[ASN][1000 genomes]
rs6456364	0.89[ASN][1000 genomes]
rs6456366	0.89[ASN][1000 genomes]
rs6456367	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6456368	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6456369	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6456370	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67077402	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6906327	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72830669	0.89[ASN][1000 genomes]
rs742642	0.91[ASN][1000 genomes]
rs7748382	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7752780	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7752906	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7754840	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7766844	0.89[ASN][1000 genomes]
rs7772603	0.81[ASN][1000 genomes]
rs7774594	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9295474	0.91[ASN][1000 genomes]
rs9295475	0.89[ASN][1000 genomes]
rs9348440	0.89[ASN][1000 genomes]
rs9358355	0.89[ASN][1000 genomes]
rs9358356	0.90[ASN][1000 genomes]
rs9368216	0.89[ASN][1000 genomes]
rs9368218	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9460544	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9460545	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9460546	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9465860	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)