SNP Report

Basic Infomation

Name	rs11965062 dbSNP
Location	chr:6,20647962
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1012635	0.90[JPT][hapmap]
rs10946398	0.80[YRI][hapmap]
rs2050225	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328531	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs4235999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710938	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4710939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712522	0.83[YRI][hapmap]
rs4712523	0.84[YRI][hapmap]
rs4712525	0.80[YRI][hapmap]
rs4712526	0.80[YRI][hapmap]
rs6456367	0.80[YRI][hapmap]
rs6925328	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7341291	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7748382	0.88[YRI][hapmap]
rs7752780	0.80[YRI][hapmap]
rs7754840	0.80[YRI][hapmap]
rs7755830	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7756031	0.87[ASN][1000 genomes]
rs7758612	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs7774594	0.80[YRI][hapmap]
rs9460538	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs9460540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9460544	0.80[YRI][hapmap]
rs9460545	0.80[YRI][hapmap]
rs9460546	0.80[YRI][hapmap]
rs9465851	0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs9465852	0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs979614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
CDKAL1	SCAN
KAAG1	SCAN