SNP Report

Basic Infomation

Name	rs9460538 dbSNP
Location	chr:6,20640537
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11965062	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs13437429	0.81[AFR][1000 genomes]
rs2050225	0.96[ASN][1000 genomes]
rs2328528	0.83[AFR][1000 genomes]
rs2328529	0.83[AFR][1000 genomes]
rs2328531	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4235999	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs4515379	0.81[AFR][1000 genomes]
rs4710938	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs4710939	0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs56241903	0.83[AFR][1000 genomes]
rs6925328	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6940200	0.85[AFR][1000 genomes]
rs7341291	0.87[ASN][1000 genomes]
rs7751957	0.82[AFR][1000 genomes]
rs7755830	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs7756031	0.83[ASN][1000 genomes]
rs7758612	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7768642	0.83[AFR][1000 genomes]
rs9295472	0.81[AFR][1000 genomes]
rs9460537	0.83[AFR][1000 genomes]
rs9460540	0.95[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs9465837	0.81[AFR][1000 genomes]
rs9465841	0.81[AFR][1000 genomes]
rs9465846	0.83[AFR][1000 genomes]
rs9465847	0.83[AFR][1000 genomes]
rs9465850	0.85[AFR][1000 genomes]
rs9465851	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9465852	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs979614	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
E2F3	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)