SNP Report
Name | rs9460540   dbSNP |
---|---|
Location | chr:6,20648762 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1012635 | 0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes] |
rs11965062 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2050225 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2328531 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes] |
rs4235999 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4710938 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4710939 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6925328 | 0.95[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes] |
rs7341291 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7755830 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs7756031 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs7758612 | 0.95[CHB][hapmap];0.86[ASN][1000 genomes] |
rs9460538 | 0.95[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes] |
rs9465851 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes] |
rs9465852 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes] |
rs979614 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
CDKAL1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014