SNP Report
Basic Infomation
| Name | rs2050225 dbSNP |
|---|---|
| Location | chr:6,20652121 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11965062 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2328531 | 0.96[ASN][1000 genomes] |
| rs4235999 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4710938 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4710939 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6925328 | 0.96[ASN][1000 genomes] |
| rs7341291 | 0.91[ASN][1000 genomes] |
| rs7755830 | 0.87[ASN][1000 genomes] |
| rs7756031 | 0.87[ASN][1000 genomes] |
| rs7758612 | 0.88[ASN][1000 genomes] |
| rs9460538 | 0.96[ASN][1000 genomes] |
| rs9460540 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9465851 | 0.96[ASN][1000 genomes] |
| rs9465852 | 0.96[ASN][1000 genomes] |
| rs979614 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014