SNP Report
Basic Infomation
| Name | rs4235999 dbSNP |
|---|---|
| Location | chr:6,20643222 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012635 | 0.90[JPT][hapmap] |
| rs11965062 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2050225 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2328531 | 0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs4710938 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4710939 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6456369 | 0.80[YRI][hapmap] |
| rs6456370 | 0.82[AFR][1000 genomes] |
| rs6906327 | 0.93[ASW][hapmap];0.91[LWK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs6925328 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7341291 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7755830 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7756031 | 0.87[ASN][1000 genomes] |
| rs7758612 | 0.95[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs9460538 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs9460540 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9465851 | 0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs9465852 | 0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs979614 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014