SNP Report
Basic Infomation
| Name | rs4710938 dbSNP |
|---|---|
| Location | chr:6,20640904 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1012635 | 0.89[JPT][hapmap] |
| rs10946398 | 0.80[YRI][hapmap] |
| rs11965062 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2050225 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2328531 | 0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs4235999 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4710939 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6925328 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7341291 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7748382 | 0.81[YRI][hapmap] |
| rs7754840 | 0.80[YRI][hapmap] |
| rs7755830 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7756031 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7758612 | 0.95[CHB][hapmap];0.88[ASN][1000 genomes] |
| rs9460538 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs9460540 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9460546 | 0.80[YRI][hapmap] |
| rs9465851 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs9465852 | 0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs979614 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| E2F3 | Distal transcriptional regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014