SNP Report

Basic Infomation

Name	rs10440833 dbSNP
Location	chr:6,20688121
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10946398	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2206734	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs2328545	0.86[JPT][hapmap]
rs35261542	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35612982	0.97[ASN][1000 genomes]
rs4710940	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4710941	0.96[ASN][1000 genomes]
rs4712522	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4712523	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4712525	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4712526	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6456364	0.86[JPT][hapmap]
rs6456367	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6456368	0.86[JPT][hapmap]
rs6456369	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs67131976	0.97[ASN][1000 genomes]
rs6906327	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs6931514	0.95[CEU][hapmap];0.87[YRI][hapmap];0.87[EUR][1000 genomes]
rs7451008	0.93[EUR][1000 genomes]
rs7748382	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7752780	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7752906	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7754840	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7756992	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7766070	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772603	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7774594	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs9295474	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs9295475	0.85[JPT][hapmap]
rs9348440	0.85[JPT][hapmap]
rs9348441	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9350271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9356744	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9358356	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs9368219	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs9368222	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9460544	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs9460545	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs9460546	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9465850	0.83[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)